Databases
June 19, 2008
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General, Collection
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| Links Collection | Databases on Medicine and Molecular Biology |
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Complete Genomes
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| Riley Lab | Escherichia coli | |
| Mouse genome informatics | Mus musculus | |
| The Arabidopsis Resource | Arabidopsis thaliana | |
| Dictybase | Dictyostelium discoideum | |
| Flybase | Drosophila melanogaster | |
| NCBI | Homo Sapiens |
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Nucleotides
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| ZAIK (RRZK) | Databases on gendb server, local user only | |
| EMBL | EMBL Nucleotide sequence database (EBI) | |
| Genbank | GenBank Nucleotide Sequence database (NCBI) | |
| dbEST | Expressed Sequence Tags database (NCBI) | |
| dbSTS | Sequence Tagged Sites database (NCBI) | |
| DDBJ | DNA Data Bank of Japan | |
| EPD | Eukaryotic Promoter database (TRADAT) | |
| HGI | TIGR Human Gene Index | |
| NCGR | National Center for Genome Resources | |
| NDB | Nucleic Acid Databank (3D structures) (BSR) |
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Proteins
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| SWISS-PROT | Curated Protein sequence database | |
| PROSITE | Dictionary of protein sites and patterns | |
| BLOCKS | Blocks are multiply aligned ungapped segments | |
| Pfam | Protein families database (HMM derived) | |
| PRINTS | Protein Motif fingerprint database | |
| ProDom | Protein domain database | |
| Kabat | Kabat database of proteins of immunological interest | |
| PMD | Protein Mutation database | |
| DIP | Database of Interacting Proteins |
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Special
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| IMGT | ImMunoGeneTics database | |
| RDP | Ribosomal Database Project II | |
| HOVERGEN | Homologous Vertebrate Genes database | |
| AsDb | Aberrant Splicing database | |
| ACUTS | Ancient conserved untranslated DNA sequences database | |
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CUTG |
Codon usage database |
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3D structures
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| PDB | Protein Data Bank | |
| ZAIK (RRZK) | PDB database copy, local user only | |
| BioMagResBank | NMR data repository for on proteins, peptides, and nucleic acids | |
| SWISS-3DIMAGE | 3D images of proteins and other biological macromolecules | |
| SWISS-MODEL Repository | Automatically generated protein models database | |
| Molecule to go | A browser for PDB | |
| CCDC | Cambridge Crystallographic Data Center | |
| CATH | Manually curated classification of protein domain structures | |
| SCOP | Structural classification of proteins | |
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Other
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| Newt | Taxonomy database | |
October 04, 2010
Center for Biochemistry, Joseph-Stelzmann-Straße 52, D50931 Cologne
Suggestions and wishes: Budi Tunggal
Voice: +49 221 4786930, Fax: +49 221 4786979
