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Dictyostelium discoideum
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  1. Klionsky, DJ. and 1269 others. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8:4, 1-100 (2012)

  2. Müller-Taubenberger A, Kortholt A and Eichinger L. Simple System - Substantial Share: The use of Dictyostelium in cell biology and molecular medicine. Eur. J. Cell Biol. 92, 45-53 (2013)

  3. Bozzaro S, Peracino B and Eichinger L. Dictyostelium host response to Legionella infection: strategies and assays. Methods Mol. Biol. 954, 417-438 (2013)

  4. Clemen CS, Eichinger L and Schröder R. Reply: Hereditary spastic paraplegia caused by a mutation in the VCP gene - VCP: A jack of all trades in neuro- and myodegeneration? Brain 135, 1-3 (2012)

  5. Arhzaouy K, Strucksberg KH, Tung SM, Tangavelou K, Stumpf M, Faix J, Schröder R, Clemen CS, and Eichinger L. Heteromeric p97/p97R155C complexes induce dominant negative changes in wild-type and autophagy 9-deficient Dictyostelium strains. PLoS ONE 10, e46879 (2012)

  6. Chang GS, Noegel AA, Mavrich TN, Müller R, Tomsho L, Ward E, Felder M, Jiang C, Eichinger L, Glöckner G, Schuster SC, Pugh BF. Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium. Genome Res. 22, 1098-1106. (2012)

  7. Xavier CP, Rastetter RH, Blömacher M, Stumpf M, Himmel M, Morgan RO, Fernandez MP, Wang C, Osman A, Miyata Y, Gjerset RA, Eichinger L, Hofmann A, Linder S, Noegel AA, Clemen CS. Phosphorylation of CRN2 by CK2 regulates F-actin and Arp2/3 interaction and inhibits cell migration. Sci Rep. 2, 241 (2012)

  8. Rashmi RN, Eckes B, Glöckner G, Groth M, Neumann S, Gloy J, Sellin L, Walz G, Schneider M, Karakesisoglou I, Eichinger L, Noegel AA. The nuclear envelope protein Nesprin-2 has roles in cell proliferation and differentiation during wound healing. Nucleus 3, 172-186 (2012)

  9. Sillo A, Matthias J, Konertz R, Bozzaro S, Eichinger L. Salmonella typhimurium is pathogenic for Dictyostelium cells and subverts the starvation response. Cell Microbiol. 13, 1793-1811 (2011)

  10. Heidel A, Lawal H, Felder M, Schilde C, Helps N, Tunggal B, Rivero F, John U, Schleicher M, Eichinger L, Platzer M, Noegel A, Schaap P, Glöckner G. Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Genome Res. 21, 1882-91 (2011)

  11. Eichinger L. Model organisms to study host - pathogen interaction: prerequisites for the identification of novel drug targets. Curr. Drug Targets 12, 934-935 (2011)

  12. Riyahi TY, Frese F, Steinert M, Omosigho N N, Glöckner G, Eichinger L, Orabi B, Williams RSB, Noegel AA. 2011. RpkA, a highly conserved GPCR with a lipid kinase domain, has a role in phagocytosis and anti-bacterial defense. PLoS One 6, e27311.

  13. Bozzaro, S. and L. Eichinger. 2011. The professional phagocyte Dictyostelium discoideum as a model host for bacterial pathogens. Curr. Drug Targets 12, 942-954.

  14. Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H , Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV. 2011. Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biol. 12, R20.

  15. Sillo A., Matthias J, Konertz R, Bozzaro S, Eichinger L. 2011. Salmonella thyphimurium is pathogenic for Dictyostelium cells and subverts the starvation response. Cell. Microbiol. 13, 1793–1811.

  16. Shina, M.C., A. Müller-Taubenberger, C. Ünal, M. Schleicher, M. Steinert, L. Eichinger, R Müller, G. Glöckner, and A.A. Noegel. 2011. Redundant and unique roles of coronin proteins in Dictyostelium. Cell. Mol. Life Sci. 68, 303-313.

  17. Clemen, C.S., K. Tangavelou, K-H. Strucksberg, S. Just, L. Gaertner, H. Regus-Leidig, M. Stumpf, J. Reimann, R. Coras, R.O. Morgan, M-P. Fernandez, A. Hofmann, S. Müller, B. Schoser, F-G. Hanisch, W. Rottbauer, I. Blümcke, S. von Hörsten, L. Eichinger, and R. Schröder. 2010. Strumpellin is a novel valosin-containing protein binding partner linking hereditary spastic paraplegia to protein aggregation diseases. Brain 133, 2920-2941.

  18. Shina MC, Müller R, Blau-Wasser R, Glöckner G, Schleicher M, Eichinger L, Noegel AA, Kolanus W. 2010. A cytohesin homolog in Dictyostelium amoebae. PLoS One 23, e9378.

  19. Tung SM, Unal C, Ley A, Peña C, Tunggal B, Noegel AA, Krut O, Steinert M, Eichinger L. 2010. Loss of Dictyostelium ATG9 results in a pleiotropic phenotype affecting growth, development, phagocytosis and clearance and replication of Legionella pneumophila. Cell Microbiol. 11.

  20. Shina MC, Uenal C, Eichinger L, Mueller-Taubenberger A, Schleicher M, Steinert M, Noegel AA. 2010. A coronin7 homolog with functions in actin-driven processes.
    J Biol Chem. 19, 9249-61.

  21. Palka-Santini, M., B.E.E. Cleven, L. Eichinger, M. Krönke and O. Krut. 2009. Large Scale Multiplex (LSplex) PCR Improves Pathogen Detection by DNA Microarrays. BMC Microbiology 9, 1.

  22. Clemen, C.S., D. Fischer, J. Reimann, L. Eichinger, C.R. Müller, H. Müller, H.H. Goebel and R. Schröder. 2008. How much mutant protein is needed to cause a protein aggregate myopathy in vivo? - Lessons from an exceptional desminopathy. Human Mutation, E490-E499.

  23. Sultana, H., G. Neelakanta, L. Eichinger, F. Rivero and A.A. Noegel, 2008, Microarray phenotyping places cyclase associated protein CAP at the crossroad of signaling pathways reorganizing the actin cytoskeleton in Dictyostelium. Exp. Cell Res., 127-140.

  24. Eichinger, L., L. Moll and M. Armbrecht, 2008, Use of CyTM labeled cDNA in microarray analyses after determination of the incorporation rate with the Eppendorf BioPhotometer plus and UVettesâ. Eppendorf Applications Note 188, 1-5.

  25. Prabhu Y, Mondal S, Eichinger L, Noegel AA, 2007, A GPCR involved in post aggregation events in Dictyostelium discoideum, Dev Biol. 312:29-43.

  26. Odenthal, M., S. Koenig, P. Farbrother, U. Drebber, H.P. Dienes, Y. Bury and L. Eichinger. 2007. Detection of opportunistic infections by low-density microarrays: A diagnostic approach for granular lymphadenitis. Diagn. Mol. Pathol. 16:18-26.

  27. Bakthavatsalam, D., D. Brazill, R.H. Gomer, L. Eichinger, F. Rivero, A.A. Noegel. 2007. A G Protein-Coupled Receptor with a Lipid Kinase Domain Is Involved in Cell-Density Sensing. Curr. Biology 17:892-897.

  28. ###Na, J., B. Tunggal and L. Eichinger. 2007. STATc is a major regulator of the transcriptional response to hyperosmotic shock. BMC Genomics, 8:123.

  29. Khaire, N., R. Müller, R. Blau-Wasser, L. Eichinger, M. Schleicher, M. Rief, T.A. Holak and A.A. Noegel. 2007. Filamin regulated F-actin assembly is essential for morphogenesis and controls phototaxis in Dictyostelium. J. Biol. Chem., 282:1948-1955.

  30. Voolstra, C., D. Tautz, P. Farbrother, L. Eichinger and B. Harr. 2007. Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse. Genome Res., 17:42-49.

  31. Arasada, R., H. Son, N. Ramalingam, L. Eichinger, M. Schleicher and M. Rohlfs. 2006. Characterization of the Ste20-like kinase Krs1 of Dictyostelium discoideum. Eur. J. Cell Biol., 85:1059-1068.

  32. Farbrother, P., C. Wagner, J. Na, B. Tunggal, T. Morio, H. Urushihara, Y. Tanaka, M. Schleicher, M. Steinert and L. Eichinger. 2006. Dictyostelium transcriptional host cell response upon infection with Legionella. Cell. Microbiol., 8:438-456.

  33. Kuhlmann, M., B.E. Borisova, M. Kaller, P. Larsson, D. Stach, J. Na, L. Eichinger, F. Lyko, V. Ambros, F. Söderbom, Ch. Hammann and W. Nellen. 2005. Silencing of retrotransposons in Dictyostelium by DNA methylation and RNAi. Nucleic Acids Res., 33:6405-6417.

  34. Wilkins, A.; K. Szafranski; D.J. Fraser, D. Bakthavatsalam, R. Müller, P.R. Fisher, G. Glöckner, L. Eichinger, A.A. Noegel and R.H. Insall. 2005. The Dictyostelium genome encodes numerous RasGEFs with multiple biological roles. Genome Biology, 6:R68.

  35. ##Eichinger, L.*, J.A. Pachebat*, G. Glöckner*, M-A. Rajandream*, R. Sucgang*, ... 85 authors .... M. Platzer‡, R.R. Kay‡, J.G. Williams‡, P.H. Dear‡, ,A.A. Noegel‡, B. Barrell‡ and A. Kuspa‡. 2005 The genome of the social amoeba Dictyostelium discoideum. Nature, 435:43-57.

  36. Felder, M., K. Szafranski, R. Lehmann, L. Eichinger, A.A. Noegel, M. Platzer and G. Glöckner. 2005. DictyMOLD - a Dictyostelium discoideum genome browser database. Bioinformatics, 21:696-697.

  37. Van Impe, K., V. De Corte, L. Eichinger, E. Bruyneel, M. Mareel, J. Vandekerckhove and J. Gettemans. 2003. The nucleo-cytoplasmic actin binding protein CapG lacks a nuclear export sequence present in structurally related proteins J. Biol. Chem., 278 :17945-17952.

  38. Farbrother, P., S. Müller, A.A. Noegel and L. Eichinger. 2002. Comparison of probe preparation methods for DNA microarrays. BioTechniques, 33:884-888.

  39. Anjard, C., the Dictyostelium Sequencing Consortium*, and W.F. Loomis. 2002. Evolutionary analyses of the ABC transporters of Dictyostelium. Eukaryotic Cell, 1:643-652. (*members in Cologne: L. Eichinger, B. Tunggal, A.A. Noegel).

  40. #Glöckner, G., L. Eichinger, K. Szafranski, J. Pachebat, P. Dear, R. Lehmann, C. Baumgart, G. Parra, J.F. Abril, R. Guigó, K. Kumpf, B. Tunggal, the Dictyostelium Genome Sequencing Consortium, E. Cox, M.A. Quail, M. Platzer, A. Rosenthal, and A.A. Noegel. 2002. Sequence and Analysis of Chromosome 2 of Dictyostelium discoideum. Nature, 418:79-85.

  41. Janssen, K-P., R. Rost, L. Eichinger, and M. Schleicher. 2001. Characterisation of CD36/LIMPII-Homologues in Dictyostelium discoideum. J. Biol. Chem., 276:38899-38910.

  42. Glöckner, G., K. Szafranski, T. Winckler, T. Dingermann, M. Quail, E. Cox, L. Eichinger, A.A. Noegel, and A. Rosenthal. 2001. The complex repeats of Dictyostelium discoideum. Genome Res., 11:585-594.

#Faculty of Thousand, recommended reading; R. Gomer: Faculty of 1000 Biology, 29 Jul 2002 http://www.f1000biology.com/article/id/1008067/evaluation
##Faculty of Thousand, exceptional paper; J. Messing: Faculty of 1000 Biology, 19 May 2005 http://www.f1000biology.com/article/id/1025813/evaluation
###Research Highlight, BMC Genomics website (http://www.biomedcentral.com/bmcgenomics/).


Reviews:
  1. Prabhu, Y. and L. Eichinger. 2006. The Dictyostelium repertoire of seven transmembrane domain receptors. Eur. J. Cell Biol., 85:937-946.

  2. Duden, R. and L. Eichinger. 2006. Meeting Report : Vesicular Trafficking - 7th Young Scientists Meeting of the German Society for Cell Biology (DGZ). Eur. J. Cell Biol., 85:133-140.

  3. Eichinger, L. and A.A. Noegel. 2005. Comparative genomics of Dictyostelium discoideum and Entamoeba histolytica. Curr. Opin. Microbiol., 8:606-611.

  4. Williams, J.G., A.A. Noegel and L. Eichinger. 2005. Manifestations of multicellularity - Dictyostelium reports in. TIGS, 21:392-398.

  5. Eichinger, L. 2003. Revamp a model - status and prospects of the Dictyostelium genome project. Curr. Genet. 44:59-72

  6. Eichinger, L. and A.A. Noegel. 2003. Crawling into a new era - the Dictyostelium genome project. EMBO J., 22:1941-1946.



Books:
    Books:
  1. Clemen, C.S., V. Rybakin and L. Eichinger (2008)
    The Coronin Family of Proteins
    In: The Coronin Protein Family. Eds: C.C. Clemen, L. Eichinger and V. Rybakin, Landes Bioscience, Austin, Texas and Springer Science+Business Media, New York, USA, 1-5.



  2. Xavier, C-P., L. Eichinger, M.P. Fernandez, R.O. Morgan and C.S. Clemen (2008)
    Evolutionary and functional diversity of coronin proteins
    In: The Coronin Protein Family. Eds: C.C. Clemen, L. Eichinger and V. Rybakin, Landes Bioscience, Austin, Texas and Springer Science+Business Media, New York, USA, 98-109.

  3. The Coronin Protein Family. 2008. Eds.: Christoph C. Clemen, Ludwig Eichinger and Vasily Rybakin, Landes Bioscience, Austin, Texas and Springer Science+Business Media, New York, USA.

  4. Steinert, M., C. Wagner, M. Fajardo, O. Shevchuk, C. Ünal, F. Galka, K. Heuner, L. Eichinger and S. Bozzaro. 2007. The Amoeba Dictyostelium discoideum Contributes to Legionella Infection. In Legionella: State of the art 30 years after its recognition. Eds.: N.P. Cianciotto, Y. Abu Kwaik, P.H. Edelstein, B.S. Fields, D.F. Geary, T.G. Harrison, C. Joseph, R.M. Ratcliff, J.E. Stout and M.S. Swanson. ASM Press, Herndon, USA, 390-394.

  5. L. Eichinger, F. Rivero, editors. 2006. Dictyostelium discoideum. Methods and Protocols.
    In Methods in Molecular Biology Vol. 346. Humana Press, Totowa, New Jersey.


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  6. Kaul M. and L. Eichinger (2006)
    Analysis of gene expression using cDNA microarrays
    In Methods in Molecular Biology, Dictyostelium discoideum, Eds.: L. Eichinger and F. Rivero. Humana Press, Totowa: pp. 75-93.

  7. Rivero, F. and L. Eichinger (2005)
    The Microfilament System of Dictyostelium discoideum
    In Dictyostelium Genomics, Eds.: W.F. Loomis and A. Kuspa, Horizon Scientific Press, Norfolk, UK, 125-172.



Prior publication

March 11, 2013
Ludwig Eichinger
Institute for Biochemistry I, Joseph-Stelzmann-Strasse 52, D50931 Cologne
Suggestions and wishes: Budi Tunggal