Publications
Peer-Reviewed Publications
- Becker B, Hoef-Emden K (2009) Evolution of vacuolar targeting in algae.
Botanica Marina 52: 117-128.
Abstract [doi: 10.1515/bot.2009.013]
- Hoef-Emden K (2008) Molecular phylogeny of the
phycocyanin-containing cryptophytes: Evolution of biliproteins and
geographical distribution. J Phycol 44: 985-993.
Abstract [doi: 10.1111/j.1529-8817.2008.00530.x]
- Becker B, Hoef-Emden K, Melkonian M (2008) Chlamydial genes shed light on the
evolution of photoautotrophic eukaryotes. BMC Evolutionary Biology 8: 203.
Abstract [doi: 10.1186/1471-2148-8-203] –
PDF
- Tyge Christensen Prize from the International Phycological Society in recognition of the best algal
paper published in Phycologia during 2007:
Hoef-Emden K (2007) Revision of the genus
Cryptomonas (Cryptophyceae) II: Incongruences between the classical morphospecies
concept and molecular phylogeny in smaller pyrenoid-less cells.
Phycologia 46: 402-428.
Abstract
[doi: 10.2216/06-83.1]
- Finlay BJ, Esteban GF, Brown S, Fenchel T, Hoef-Emden K (2006)
Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies.
Protist 157: 377-390.
Abstract [doi: 10.1016/j.protis.2006.05.012]
- Lundholm N, Moestrup Ø, Kotaki Y, Hoef-Emden K, Scholin C, Miller P (2006)
Inter- and intraspecific variation of the
Pseudo-nitzschia delicatissima complex (Bacillariophyceae)
illustrated by rRNA probes, morphological data and phylogenetic analyses.
J Phycol 42: 464-481.
Abstract [doi: 10.1111/j.1529-8817.2006.00211.x]
- Hildebrandt U, Hoef-Emden K, Backhausen S, Bothe H, Bożek M, Siuta A,
Kuta E (2006). The rare, endemic zinc violets of Central Europe originate from
Viola lutea Huds. Plant Syst Evol 257: 205-222.
Abstract [doi: 10.1007/s00606-005-0387-4]
- Hoef-Emden K, Tran H-D, Melkonian M (2005) Lineage-specific variations
of congruent evolution among DNA sequences from three genomes, and relaxed
selective constraints on rbcL in Cryptomonas (Cryptophyceae).
BMC Evol Biol 5: 56.
Abstract [doi: 10.1186/1471-2148-5-56] –
PDF
- Hoef-Emden K, Shrestha RP, Lapidot M, Weinstein Y, Melkonian M, Arad S
(2005). Actin phylogeny and intron distribution in bangiophyte red algae
(Rhodoplantae). J Mol Evol 61: 360-371.
Abstract [doi: 10.1007/s00239-004-0366-3]
- Hoef-Emden K (2005). Multiple independent losses of photosynthesis in
the genus Cryptomonas (Cryptophyceae) – combined phylogenetic analyses
of DNA sequences of the nuclear and the nucleomorph ribosomal operons.
J Mol Evol 60: 183-195.
Abstract [doi: 10.1007/s00239-004-0089-5]
- Hoef-Emden K, Melkonian M (2003) Revision of the genus
Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and
morphology provides insights into a long-hidden dimorphism. Protist
154: 371-409.
Abstract [doi: 10.1078/143446103322454130].
Corrigendum: Hoef-Emden K, Melkonian M (2008) Protist
159: 507.
[doi: 10.1016/j.protis.2008.04.003].
- Lundholm N, Moestrup Ø, Hasle GR, Hoef-Emden K (2003) A study
of the P. pseudodelicatissima/cuspidata complex (Bacillariophyceae):
What is Pseudo-nitzschia pseudodelicatissima? J Phycol 39:
797-813.
Abstract [doi: 10.1046/j.1529-8817.2003.02031.x]
- Hoef-Emden K, Marin B, Melkonian M (2002). Nuclear and nucleomorph SSU
rDNA phylogeny in the Cryptophyta and the evolution of cryptophyte diversity.
J Mol Evol 55: 161-179.
Abstract [doi: 10.1007/s00239-002-2313-5]
- Vickerman K, Le Ray D, Hoef-Emden K, De Jonckheere J (2002) The soil
flagellate Proleptomonas faecicola: Cell organisation and phylogeny
suggest that the only described free-living trypanosomatid is not a
kinetoplastid but has cercomonad affinities. Protist 153:
9-24.
Abstract [doi: 10.1078/1434-4610-00079]
- Marin B, Hoef-Emden K, Melkonian M (1996) Light and electron microscope
observations on Tetraselmis desikacharyi sp. nov.
(Chlorodendrales, Chlorophyta). Nova Hedwigia Beih. 112:
461-475
Non-Reviewed Publications
- Hoef-Emden K, Archibald JM (2008) Cryptomonads
= Goniomonas + plastid-containing cryptophytes.
Cryptophyta (Version 14 September 2008). In
The Tree of Life Web
Project
- Hoef-Emden K, Küpper FC, Andersen RA (2007) Meeting report: Sloan Foundation
Workshop to resolve problems relating to the taxonomy of microorganisms and to culture
collections arising from the barcoding initiatives; Portland ME, November 6-7, 2006.
Protist 158: 135-137.
[doi: 10.1016/j.protis.2007.02.001]
- Hoef-Emden K (2005) Molecular phylogenetic analyses and real-life data.
Comp Sci Eng 7: 86-91 (minireview).
Abstract [doi: 10.1109/MCSE.2005.55]
Books
-
Linne von Berg K-H, Hoef-Emden K, Marin B, Melkonian M (2004) Der
Kosmos-Algenführer. Die wichtigsten Süßwasseralgen im
Mikroskop. Serie Kosmos Naturführer, Kosmos-Verlag, Stuttgart
Invited Talks or Workshop Participations
- Hoef-Emden K (2009) Phylogenetic trees: More than just branches and
nodes. Symposium Talk. Ninth International Phycological Congress, 2-8 August 2009, Tokyo,
Japan.
- Hoef-Emden K (2009) Evolution of Molecular and Phenotypic Characters
within the Class Cryptophyceae, an Algal Group with Four Genomes. SFB Colloquium
"Molecular Biology of Complex Functions in Botanical Systems (Molekulare Biologie
komplexer Leistungen von botanischen Systemen)".
Sonderforschungsbereich 480, Ruhr-Universität, Bochum, Germany.
- Hoef-Emden K (2008) Diversity and systematics of the Cryptophyceae:
Dimorphism, hidden genetic diversity and undersampling. International
Symposium on Protistology: Evolution and Diversity, November 8-9, 2008.
Laboratory of Advanced Research D, University of Tsukuba, Japan.
- Sloan Foundation Workshop to Resolve Microorganism Taxonomic and
Culture Collection Problems Arising from the New Barcoding Initiatives,
November 6-7, 2006. Portland, Maine, USA
- Hoef-Emden K (2005) Systematics and ecology of cryptomonads.
Institut für Süßwasserökologie und Binnenfischerei, Abt.
Limnologie Geschichteter Seen, Neuglobsow, Germany.
- Hoef-Emden K (2004) What do molecular phylogeny and morphology tell us
about evolution in the Cryptophyceae? Botanical Colloquium at the University
of Göttingen, Albrecht-von-Haller-Institut für Pflanzenwissenschaften,
Göttingen, Germany.